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botv exostosin like glycosyltransferase 3 [ Daphnia magna ]

Gene ID: 116933567, updated on 3-Jul-2024

Summary

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Gene symbol
botv
Gene description
exostosin like glycosyltransferase 3
See related
EnsemblRapid:LOC116933567
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See botv in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
11
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG5 NC_059186.1 (8141012..8144753, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) Unplaced Scaffold NW_022654064.1 (4900..7762)

Linkage Group LG5 - NC_059186.1Genomic Context describing neighboring genes Neighboring gene transcription factor daughterless Neighboring gene trichohyalin Neighboring gene uncharacterized LOC116933568 Neighboring gene uncharacterized LOC116923068

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-3
Names
exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059186.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    8141012..8144753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045174422.1 → XP_045030357.1  exostosin-3

    UniProtKB/TrEMBL
    A0A164PAJ0
    Related
    XP_045030357.1, XM_045174422.1
    Conserved Domains (3) summary
    TIGR02169
    Location:70 → 174
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam03016
    Location:205 → 481
    Exostosin; Exostosin family
    pfam09258
    Location:645 → 882
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_045174421.1 → XP_045030356.1  exostosin-3

    UniProtKB/TrEMBL
    A0A164PAJ0
    Related
    XP_045030356.1, XM_045174421.1
    Conserved Domains (3) summary
    TIGR02169
    Location:70 → 174
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam03016
    Location:205 → 481
    Exostosin; Exostosin family
    pfam09258
    Location:645 → 882
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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