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LOC116930698 mitochondrial basic amino acids transporter [ Daphnia magna ]

Gene ID: 116930698, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116930698
Gene description
mitochondrial basic amino acids transporter
See related
EnsemblRapid:LOC116930698
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116930698 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG2 NC_059183.1 (6965869..6970572, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG9 NC_046182.1 (836771..841939)

Linkage Group LG2 - NC_059183.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123469639 Neighboring gene putative uncharacterized protein DDB_G0291608 Neighboring gene uncharacterized LOC116930697 Neighboring gene putative leucine-rich repeat-containing protein DDB_G0290503

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate. Swart E, et al. Environ Pollut, 2019 Sep. PMID 31158668
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059183.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    6965869..6970572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032938091.2 → XP_032793982.1  mitochondrial basic amino acids transporter

    UniProtKB/TrEMBL
    A0A164V0Y0
    Related
    XP_032793982.1, XM_032938091.2
    Conserved Domains (1) summary
    pfam00153
    Location:187 → 277
    Mito_carr; Mitochondrial carrier protein

  2. XM_032938092.2 → XP_032793983.1  mitochondrial basic amino acids transporter

    UniProtKB/TrEMBL
    A0A164V0Y0
    Related
    XP_032793983.1, XM_032938092.2
    Conserved Domains (1) summary
    pfam00153
    Location:187 → 277
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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Gene LinkOut

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