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LOC116929717 lactosylceramide 4-alpha-galactosyltransferase [ Daphnia magna ]

Gene ID: 116929717, updated on 6-Jun-2024

Summary

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Gene symbol
LOC116929717
Gene description
lactosylceramide 4-alpha-galactosyltransferase
See related
EnsemblRapid:LOC116929717
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116929717 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG8 NC_059189.1 (8820966..8824193, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG8 NC_046181.1 (6406443..6409672, complement)

Linkage Group LG8 - NC_059189.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116929414 Neighboring gene O-linked N-acetylglucosamine (GlcNAc) transferase sxc Neighboring gene Alpha-soluble NSF attachment protein Neighboring gene 4-coumarate--CoA ligase 3 Neighboring gene uncharacterized LOC116929790

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059189.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    8820966..8824193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032937052.2 → XP_032792943.1  lactosylceramide 4-alpha-galactosyltransferase

    UniProtKB/TrEMBL
    A0A0N8E345, A0A0P6HQU6
    Related
    XP_032792943.1, XM_032937052.2
    Conserved Domains (2) summary
    pfam04572
    Location:266 → 392
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:135 → 239
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  2. XM_032937051.2 → XP_032792942.1  lactosylceramide 4-alpha-galactosyltransferase

    UniProtKB/TrEMBL
    A0A0N8E345, A0A0P6HQU6
    Related
    XP_032792942.1, XM_032937051.2
    Conserved Domains (2) summary
    pfam04572
    Location:266 → 392
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:135 → 239
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  3. XM_045177601.1 → XP_045033536.1  lactosylceramide 4-alpha-galactosyltransferase

    UniProtKB/TrEMBL
    A0A0N8E345, A0A0P6HQU6
    Related
    XP_045033536.1, XM_045177601.1
    Conserved Domains (2) summary
    pfam04572
    Location:266 → 392
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:135 → 239
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein
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