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LOC116927482 beta-1,4-N-acetylgalactosaminyltransferase bre-4 [ Daphnia magna ]

Gene ID: 116927482, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116927482
Gene description
beta-1,4-N-acetylgalactosaminyltransferase bre-4
See related
EnsemblRapid:LOC116927482
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116927482 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG7 NC_059188.1 (6225099..6226666)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG7 NC_046180.1 (3199525..3201102)

Linkage Group LG7 - NC_059188.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116927339 Neighboring gene uncharacterized LOC116927338 Neighboring gene endocuticle structural glycoprotein SgAbd-3-like Neighboring gene endocuticle structural glycoprotein SgAbd-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase bre-4
Names
Beta-1,4-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059188.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    6225099..6226666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032934532.2 → XP_032790423.2  beta-1,4-N-acetylgalactosaminyltransferase bre-4

    Related
    XP_032790423.2, XM_032934532.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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