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LOC116926273 polypeptide N-acetylgalactosaminyltransferase 2 [ Daphnia magna ]

Gene ID: 116926273, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116926273
Gene description
polypeptide N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:LOC116926273
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116926273 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
12
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG7 NC_059188.1 (11073753..11077130, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG7 NC_046180.1 (7526242..7529564, complement)

Linkage Group LG7 - NC_059188.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing factor 17 Neighboring gene alpha-Mannosidase class I a Neighboring gene uncharacterized LOC116926281 Neighboring gene KRR1 small subunit processome component homolog dbe Neighboring gene uncharacterized LOC116926365 Neighboring gene uncharacterized LOC116926373

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate. Swart E, et al. Environ Pollut, 2019 Sep. PMID 31158668

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059188.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    11073753..11077130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032933107.2 → XP_032788998.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

    Related
    XP_032788998.1, XM_032933107.2
    Conserved Domains (2) summary
    cd02510
    Location:117 → 412
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:438 → 550
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_032933106.2 → XP_032788997.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A0P5XMD0
    Related
    XP_032788997.1, XM_032933106.2
    Conserved Domains (2) summary
    cd02510
    Location:118 → 413
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:439 → 551
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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