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LOC116926088 beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [ Daphnia magna ]

Gene ID: 116926088, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116926088
Gene description
beta-1,4-N-acetylgalactosaminyltransferase bre-4-like
See related
EnsemblRapid:LOC116926088
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116926088 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
5
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG7 NC_059188.1 (6249709..6251824)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG7 NC_046180.1 (5084539..5085321, complement)

Linkage Group LG7 - NC_059188.1Genomic Context describing neighboring genes Neighboring gene endocuticle structural glycoprotein SgAbd-3 Neighboring gene uncharacterized LOC123474047 Neighboring gene larval cuticle protein 1-like Neighboring gene larval cuticle protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate. Swart E, et al. Environ Pollut, 2019 Sep. PMID 31158668

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase bre-4-like
Names
Beta-1,4-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059188.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    6249709..6251824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045175864.1 → XP_045031799.1  beta-1,4-N-acetylgalactosaminyltransferase bre-4-like

    Related
    XP_045031799.1, XM_045175864.1

  2. XM_045175865.1 → XP_045031800.1  beta-1,4-N-acetylgalactosaminyltransferase bre-4-like

    Related
    XP_045031800.1, XM_045175865.1

  3. XM_045175863.1 → XP_045031798.1  beta-1,4-N-acetylgalactosaminyltransferase bre-4-like

    Related
    XP_045031798.1, XM_045175863.1

  4. XM_045175866.1 → XP_045031801.1  beta-1,4-N-acetylgalactosaminyltransferase bre-4-like

    Related
    XP_045031801.1, XM_045175866.1
Nucleotide Protein
Heading Accession and Version

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