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LOC116922332 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Daphnia magna ]

Gene ID: 116922332, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116922332
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
See related
EnsemblRapid:LOC116922332
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116922332 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG5 NC_059186.1 (1058056..1061395, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG5 NC_046178.1 (3330209..3336497, complement)

Linkage Group LG5 - NC_059186.1Genomic Context describing neighboring genes Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene uncharacterized LOC116935198 Neighboring gene uncharacterized LOC116922327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059186.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    1058056..1061395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032928723.2 → XP_032784614.2  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    Related
    XP_032784614.2, XM_032928723.2
Nucleotide Protein
Heading Accession and Version

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