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LOC116920093 beta-1,3-galactosyltransferase 5 [ Daphnia magna ]

Gene ID: 116920093, updated on 30-Nov-2023

Summary

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Gene symbol
LOC116920093
Gene description
beta-1,3-galactosyltransferase 5
See related
EnsemblRapid:LOC116920093
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC116920093 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG4 NC_059185.1 (1573068..1574747, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG4 NC_046177.1 (1717253..1718802)

Linkage Group LG4 - NC_059185.1Genomic Context describing neighboring genes Neighboring gene pseudouridine-metabolizing bifunctional protein C1861.05 Neighboring gene uncharacterized LOC123471515 Neighboring gene Claudin superfamily protein pickel Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene uncharacterized LOC116921266 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059185.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    1573068..1574747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032926151.2 → XP_032782042.2  beta-1,3-galactosyltransferase 5

    Related
    XP_032782042.2, XM_032926151.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases