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LOC116919183 zeta-sarcoglycan [ Daphnia magna ]

Gene ID: 116919183, updated on 1-Jul-2024

Summary

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Gene symbol
LOC116919183
Gene description
zeta-sarcoglycan
See related
EnsemblRapid:LOC116919183
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See LOC116919183 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG3 NC_059184.1 (381728..387526, complement)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG3 NC_046176.1 (343179..350682, complement)

Linkage Group LG3 - NC_059184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116919033 Neighboring gene uncharacterized LOC116919185 Neighboring gene Sterol regulatory element binding protein Neighboring gene transient receptor potential channel pyrexia

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate. Swart E, et al. Environ Pollut, 2019 Sep. PMID 31158668
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059184.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    381728..387526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045171485.1 → XP_045027420.1  zeta-sarcoglycan

    UniProtKB/TrEMBL
    A0A0P6JZZ8
    Related
    XP_045027420.1, XM_045171485.1
    Conserved Domains (1) summary
    pfam04790
    Location:69 → 332
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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