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LOC116918876 xylosyltransferase oxt [ Daphnia magna ]

Gene ID: 116918876, updated on 1-Jul-2024

Summary

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Gene symbol
LOC116918876
Gene description
xylosyltransferase oxt
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See LOC116918876 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
2
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG3 NC_059184.1 (2686945..2689899)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG3 NC_046176.1 (2939318..2942751, complement)

Linkage Group LG3 - NC_059184.1Genomic Context describing neighboring genes Neighboring gene Tsr1 ribosome assembly factor Neighboring gene ecdysoneless cell cycle regulator Neighboring gene uncharacterized LOC123470585 Neighboring gene uncharacterized LOC116918883 Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase 1-B Neighboring gene casein kinase I Neighboring gene RNA-binding protein 28 Neighboring gene U2 small nuclear riboprotein auxiliary factor 50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: xylosyltransferase oxt
Names
EOG090X01AN

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059184.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    2686945..2689899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032924669.2 → XP_032780560.1  LOW QUALITY PROTEIN: xylosyltransferase oxt

    UniProtKB/TrEMBL
    A0A4Y7MFV8, A0A4Y7MJF9, A0A4Y7MMN9, A0A4Y7MPI3
    Conserved Domains (3) summary
    pfam01822
    Location:130 → 209
    WSC; WSC domain
    pfam12529
    Location:538 → 702
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:239 → 493
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases