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Chpf Chondroitin polymerizing factor [ Daphnia magna ]

Gene ID: 116918414, updated on 3-Jul-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
See related
EnsemblRapid:LOC116918414
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2063170v1.1 (GCF_020631705.1) Unplaced Scaffold NW_025533127.1 (174920..178768)
100 previous assembly ASM399081v1 (GCF_003990815.1) Linkage Group LG3 NC_046176.1 (10833729..10837544)

NW_025533127.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 21 Neighboring gene Elongator complex protein 5 Neighboring gene RISC-loading complex subunit tarbp2 Neighboring gene dnaJ homolog subfamily C member 1 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit Ost48 Neighboring gene Segment polarity protein dishevelled Neighboring gene ABC transporter ATP-binding protein/permease Hmt-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase
Names
putative Chondroitin sulfate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NW_025533127.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    174920..178768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032924114.2 → XP_032780005.2  chondroitin sulfate glucuronyltransferase

    Related
    XP_032780005.2, XM_032924114.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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