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Clmn calmin [ Rattus rattus (black rat) ]

Gene ID: 116905386, updated on 18-Mar-2024

Summary

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Gene symbol
Clmn
Gene description
calmin
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus rattus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Orthologs
human mouse all
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Genomic context

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See Clmn in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 7 NC_046160.1 (115861274..115954991, complement)

Chromosome 7 - NC_046160.1Genomic Context describing neighboring genes Neighboring gene goosecoid homeobox Neighboring gene dicer 1, ribonuclease III Neighboring gene spectrin repeat containing nuclear envelope family member 3 Neighboring gene uncharacterized LOC116905388 Neighboring gene small Cajal body-specific RNA 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046160.1 Chromosome 7 Reference Rrattus_CSIRO_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of meiotic nuclear membrane microtubule tethering complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rrattus_CSIRO_v1 Primary Assembly

Genomic

  1. NC_046160.1 Reference Rrattus_CSIRO_v1 Primary Assembly

    Range
    115861274..115954991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032908330.1 → XP_032764221.1  calmin isoform X2

    Conserved Domains (2) summary
    cd21191
    Location:29 → 142
    CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
    cd21245
    Location:186 → 291
    CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

  2. XM_032908329.1 → XP_032764220.1  calmin isoform X1

    Conserved Domains (2) summary
    cd21191
    Location:29 → 142
    CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
    cd21245
    Location:186 → 291
    CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins

  3. XM_032908331.1 → XP_032764222.1  calmin isoform X3

    Conserved Domains (2) summary
    cd21191
    Location:29 → 142
    CH_CLMN_rpt1; first calponin homology (CH) domain found in calmin and similar proteins
    cd21245
    Location:186 → 291
    CH_CLMN_rpt2; second calponin homology (CH) domain found in calmin and similar proteins
Nucleotide Protein
Heading Accession and Version

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