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TBX2 T-box transcription factor 2 [ Lontra canadensis (Northern American river otter) ]

Gene ID: 116876001, updated on 18-Mar-2024

Summary

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Gene symbol
TBX2
Gene description
T-box transcription factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Lontra canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Lontra
Orthologs
human mouse all
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Genomic context

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See TBX2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current GSC_riverotter_1.0 (GCF_010015895.1) Unplaced Scaffold NW_022631037.1 (1404470..1413933)

NW_022631037.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene BCAS3 microtubule associated cell migration factor Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1-like Neighboring gene putative cuticle collagen 145 Neighboring gene putative high mobility group protein B1-like 1 Neighboring gene T-box transcription factor 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022631037 Unplaced Scaffold Reference GSC_riverotter_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lontra canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_riverotter_1.0

Genomic

  1. NW_022631037.1 Reference GSC_riverotter_1.0

    Range
    1404470..1413933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032871871.1 → XP_032727762.1  T-box transcription factor TBX2 isoform X2

    Conserved Domains (2) summary
    pfam12598
    Location:305 → 383
    TBX; T-box transcription factor
    cd20188
    Location:103 → 287
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

  2. XM_032871870.1 → XP_032727761.1  T-box transcription factor TBX2 isoform X1

    Conserved Domains (2) summary
    pfam12598
    Location:305 → 383
    TBX; T-box transcription factor
    cd20188
    Location:103 → 287
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
Nucleotide Protein
Heading Accession and Version

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