U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TDP2 tyrosyl-DNA phosphodiesterase 2 [ Lontra canadensis (Northern American river otter) ]

Gene ID: 116869986, updated on 18-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TDP2
Gene description
tyrosyl-DNA phosphodiesterase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Lontra canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Lontra
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TDP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current GSC_riverotter_1.0 (GCF_010015895.1) Unplaced Scaffold NW_022631015.1 (22427638..22442198, complement)

NW_022631015.1Genomic Context describing neighboring genes Neighboring gene KIAA0319 ortholog Neighboring gene U6 spliceosomal RNA Neighboring gene acyl-CoA thioesterase 13 Neighboring gene chromosome unknown C6orf62 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022631015 Unplaced Scaffold Reference GSC_riverotter_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-tyrosyl-DNA phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tyrosyl-DNA phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Lontra canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_riverotter_1.0

Genomic

  1. NW_022631015.1 Reference GSC_riverotter_1.0

    Range
    22427638..22442198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032861647.1 → XP_032717538.1  tyrosyl-DNA phosphodiesterase 2 isoform X2

    Conserved Domains (2) summary
    cd09080
    Location:110 → 297
    TDP2; Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains
    cd14344
    Location:23 → 59
    UBA_TYDP2; UBA-like domain found in tyrosyl-DNA phosphodiesterase 2 (TDP2) and similar proteins

  2. XM_032861646.1 → XP_032717537.1  tyrosyl-DNA phosphodiesterase 2 isoform X1

    Conserved Domains (2) summary
    cd09080
    Location:110 → 354
    TDP2; Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains
    cd14344
    Location:23 → 59
    UBA_TYDP2; UBA-like domain found in tyrosyl-DNA phosphodiesterase 2 (TDP2) and similar proteins

  3. XM_032861645.1 → XP_032717536.1  tyrosyl-DNA phosphodiesterase 2 isoform X1

    Conserved Domains (2) summary
    cd09080
    Location:110 → 354
    TDP2; Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains
    cd14344
    Location:23 → 59
    UBA_TYDP2; UBA-like domain found in tyrosyl-DNA phosphodiesterase 2 (TDP2) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.