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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116839786, updated on 18-Mar-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022646641.1 (544065..564387)

NW_022646641.1Genomic Context describing neighboring genes Neighboring gene platelet activating factor receptor Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022646641 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022646641.1 Reference ASM359739v1

    Range
    544065..564387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032805946.1 → XP_032661837.1  acid sphingomyelinase-like phosphodiesterase 3b

    UniProtKB/TrEMBL
    A0A8C0HB19
    Conserved Domains (1) summary
    cd00842
    Location:25 → 325
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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