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PLEC plectin [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116838515, updated on 18-Mar-2024

Summary

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Gene symbol
PLEC
Gene description
plectin
See related
Ensembl:ENSCABG00000009450
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See PLEC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022646008.1 (88476..177607, complement)

NW_022646008.1Genomic Context describing neighboring genes Neighboring gene dystonin-like Neighboring gene uncharacterized LOC116838516 Neighboring gene uncharacterized LOC116838517 Neighboring gene poly(ADP-ribose) polymerase family member 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022646008 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022646008.1 Reference ASM359739v1

    Range
    88476..177607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032803789.1 → XP_032659680.1  plectin

    UniProtKB/TrEMBL
    A0A8C0GWN0
    Related
    ENSCABP00000013551.1, ENSCABT00000014870.1
    Conserved Domains (9) summary
    PTZ00121
    Location:1832 → 2695
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4029 → 4066
    PLEC; Plectin repeat
    cd00176
    Location:747 → 895
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1048 → 1767
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:2908 → 2947
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam18373
    Location:985 → 1062
    Spectrin_like; Spectrin like domain
    cd21188
    Location:174 → 278
    CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
    cd21238
    Location:291 → 396
    CH_PLEC_rpt2; second calponin homology (CH) domain found in plectin and similar proteins
Nucleotide Protein
Heading Accession and Version

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