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CSPG4 chondroitin sulfate proteoglycan 4 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116836295, updated on 18-Mar-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
See related
Ensembl:ENSCABG00000017808
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022644922.1 (1621098..1698443)

NW_022644922.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene U4 spliceosomal RNA Neighboring gene ciliary microtubule associated protein 1C Neighboring gene uncharacterized LOC116836287 Neighboring gene sorting nexin 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022644922 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022644922.1 Reference ASM359739v1

    Range
    1621098..1698443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032799837.1 → XP_032655728.1  chondroitin sulfate proteoglycan 4

    UniProtKB/TrEMBL
    A0A8C0IY86
    Related
    ENSCABP00000024150.1, ENSCABT00000026461.1
    Conserved Domains (2) summary
    cd00110
    Location:42 → 191
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1484 → 1591
    Cadherin_3; Cadherin-like
Nucleotide Protein
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