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KIRREL1 kirre like nephrin family adhesion molecule 1 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116831898, updated on 18-Mar-2024

Summary

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Gene symbol
KIRREL1
Gene description
kirre like nephrin family adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See KIRREL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022643155.1 (628001..711798)

NW_022643155.1Genomic Context describing neighboring genes Neighboring gene SLAM family member 5-like Neighboring gene uncharacterized LOC116831790 Neighboring gene SLAM family member 8-like Neighboring gene hepatocyte cell adhesion molecule-like Neighboring gene hepatocyte cell adhesion molecule-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022643155 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022643155.1 Reference ASM359739v1

    Range
    628001..711798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032792241.1 → XP_032648132.1  kin of IRRE-like protein 1

    Conserved Domains (5) summary
    smart00409
    Location:30 → 119
    IG; Immunoglobulin
    pfam13927
    Location:311 → 376
    Ig_3; Immunoglobulin domain
    cd00096
    Location:328 → 332
    Ig; Ig strand B [structural motif]
    cd05759
    Location:125 → 222
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:394 → 491
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
Nucleotide Protein
Heading Accession and Version

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