U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAPN3 calpain 3 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116825465, updated on 18-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CAPN3
Gene description
calpain 3
See related
Ensembl:ENSCABG00000015829
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022641905.1 (711283..777311, complement)

NW_022641905.1Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 23 Neighboring gene zinc finger protein 106 Neighboring gene neutral alpha-glucosidase C-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022641905 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022641905.1 Reference ASM359739v1

    Range
    711283..777311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032781518.1 → XP_032637409.1  calpain-3

    UniProtKB/TrEMBL
    A0A8C0HAV0
    Related
    ENSCABP00000021553.1, ENSCABT00000023610.1
    Conserved Domains (4) summary
    cd16190
    Location:646 → 814
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:69 → 408
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:429 → 567
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:576 → 646
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.