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ZBTB6 zinc finger and BTB domain containing 6 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

Gene ID: 116817489, updated on 18-Mar-2024

Summary

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Gene symbol
ZBTB6
Gene description
zinc finger and BTB domain containing 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonoidis abingdonii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
Orthologs
human mouse all
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Genomic context

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See ZBTB6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022648807.1 (2123473..2130449)

NW_022648807.1Genomic Context describing neighboring genes Neighboring gene RAB GTPase activating protein 1 Neighboring gene U2 spliceosomal RNA Neighboring gene G protein-coupled receptor 21 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene small nucleolar RNA SNORD90 Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene phosducin like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022648807 Unplaced Scaffold Reference ASM359739v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM359739v1

Genomic

  1. NW_022648807.1 Reference ASM359739v1

    Range
    2123473..2130449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032767682.1 → XP_032623573.1  zinc finger and BTB domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0G5E0
    Conserved Domains (5) summary
    PHA03098
    Location:56 → 254
    PHA03098; kelch-like protein; Provisional
    sd00017
    Location:350 → 370
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:32 → 147
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:348 → 370
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:362 → 386
    zf-H2C2_2; Zinc-finger double domain

  2. XM_032767683.1 → XP_032623574.1  zinc finger and BTB domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C0G5E0
    Conserved Domains (4) summary
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:324 → 346
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:338 → 362
    zf-H2C2_2; Zinc-finger double domain

  3. XM_032767684.1 → XP_032623575.1  zinc finger and BTB domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C0G5E0
    Conserved Domains (4) summary
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:324 → 346
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:338 → 362
    zf-H2C2_2; Zinc-finger double domain

  4. XM_032767685.1 → XP_032623576.1  zinc finger and BTB domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C0G5E0
    Conserved Domains (4) summary
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:324 → 346
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:338 → 362
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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