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LOC116764672 ferritin light chain-like [ Phocoena sinus (vaquita) ]

Gene ID: 116764672, updated on 9-Nov-2023

Summary

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Gene symbol
LOC116764672
Gene description
ferritin light chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
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Genomic context

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See LOC116764672 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 1 NC_045763.1 (122070439..122071031)

Chromosome 1 - NC_045763.1Genomic Context describing neighboring genes Neighboring gene transmembrane emp24 domain-containing protein 2-like Neighboring gene U6 spliceosomal RNA Neighboring gene PBX homeobox 1 Neighboring gene 40S ribosomal protein S20-like Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene retinoid X receptor gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045763.1 Chromosome 1 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ferric iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular sequestering of iron ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: ferritin light chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045763.1 Reference mPhoSin1.pri

    Range
    122070439..122071031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032653518.1 → XP_032509409.1  LOW QUALITY PROTEIN: ferritin light chain-like

    Conserved Domains (1) summary
    cd00904
    Location:10 → 169
    Ferritin; Ferritin iron storage proteins
Nucleotide Protein
Heading Accession and Version

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