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LMAN2L lectin, mannose binding 2 like [ Phocoena sinus (vaquita) ]

Gene ID: 116764246, updated on 19-Jun-2024

Summary

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Gene symbol
LMAN2L
Gene description
lectin, mannose binding 2 like
See related
Ensembl:ENSPSNG00000005472
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See LMAN2L in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 13 NC_045775.1 (81511175..81535989, complement)

Chromosome 13 - NC_045775.1Genomic Context describing neighboring genes Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene fer-1 like family member 5 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene ankyrin repeat domain 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045775.1 Chromosome 13 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045775.1 Reference mPhoSin1.pri

    Range
    81511175..81535989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032652668.1 → XP_032508559.1  VIP36-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8C9BK89
    Related
    ENSPSNP00000007366.1, ENSPSNT00000008373.1
    Conserved Domains (1) summary
    cl14058
    Location:50 → 298
    lectin_L-type; legume lectins

  2. XM_032652669.1 → XP_032508560.1  VIP36-like protein isoform X5

    Conserved Domains (1) summary
    cl14058
    Location:18 → 265
    lectin_L-type; legume lectins

  3. XM_032652670.1 → XP_032508561.1  VIP36-like protein isoform X6

    Conserved Domains (1) summary
    cl14058
    Location:50 → 244
    lectin_L-type; legume lectins

  4. XM_032652667.1 → XP_032508558.1  VIP36-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8C9BK89
    Conserved Domains (1) summary
    cl14058
    Location:50 → 298
    lectin_L-type; legume lectins

  5. XM_032652665.1 → XP_032508556.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C9BK89
    Conserved Domains (1) summary
    cl14058
    Location:50 → 309
    lectin_L-type; legume lectins

  6. XM_032652671.1 → XP_032508562.1  VIP36-like protein isoform X7

    UniProtKB/TrEMBL
    A0A8C9BK89
    Conserved Domains (1) summary
    cl14058
    Location:50 → 244
    lectin_L-type; legume lectins

  7. XM_032652666.1 → XP_032508557.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C9BK89, A0A8C9DZT9
    Related
    ENSPSNP00000007393.1, ENSPSNT00000008401.1
    Conserved Domains (1) summary
    cl14058
    Location:50 → 309
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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