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TTL tubulin tyrosine ligase [ Phocoena sinus (vaquita) ]

Gene ID: 116764181, updated on 18-Mar-2024

Summary

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Gene symbol
TTL
Gene description
tubulin tyrosine ligase
See related
Ensembl:ENSPSNG00000015237
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See TTL in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 13 NC_045775.1 (78895914..78931612, complement)

Chromosome 13 - NC_045775.1Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene RNA polymerase I subunit B Neighboring gene zinc finger CCCH-type containing 6 Neighboring gene zinc finger CCCH-type containing 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045775.1 Chromosome 13 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin--tyrosine ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045775.1 Reference mPhoSin1.pri

    Range
    78895914..78931612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032652523.1 → XP_032508414.1  tubulin--tyrosine ligase isoform X2

    UniProtKB/TrEMBL
    A0A8C9E684
    Related
    ENSPSNP00000020752.1, ENSPSNT00000023377.1
    Conserved Domains (1) summary
    pfam03133
    Location:81 → 352
    TTL; Tubulin-tyrosine ligase family

  2. XM_032652522.1 → XP_032508413.1  tubulin--tyrosine ligase isoform X1

    Conserved Domains (1) summary
    pfam03133
    Location:81 → 392
    TTL; Tubulin-tyrosine ligase family

  3. XM_032652524.1 → XP_032508415.1  tubulin--tyrosine ligase isoform X3

    Conserved Domains (1) summary
    pfam03133
    Location:23 → 334
    TTL; Tubulin-tyrosine ligase family

  4. XM_032652526.1 → XP_032508417.1  tubulin--tyrosine ligase isoform X5

    Conserved Domains (1) summary
    cl17255
    Location:81 → 331
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  5. XM_032652525.1 → XP_032508416.1  tubulin--tyrosine ligase isoform X4

    Conserved Domains (1) summary
    cl17255
    Location:81 → 331
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain
Nucleotide Protein
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