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LOC116762412 histone H2A type 1-J [ Phocoena sinus (vaquita) ]

Gene ID: 116762412, updated on 9-Nov-2023

Summary

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Gene symbol
LOC116762412
Gene description
histone H2A type 1-J
See related
Ensembl:ENSPSNG00000004508
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
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Genomic context

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Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 11 NC_045773.1 (82622418..82641885, complement)

Chromosome 11 - NC_045773.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene histone H2B type 1-K-like Neighboring gene histone H4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045773.1 Chromosome 11 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H2A type 1-J

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045773.1 Reference mPhoSin1.pri

    Range
    82622418..82641885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032649332.1 → XP_032505223.1  histone H2A type 1-J

    UniProtKB/TrEMBL
    A0A8C9BAM8, A0A8C9BEQ2
    Related
    ENSPSNP00000006018.1, ENSPSNT00000006872.1
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 128
    PTZ00017; histone H2A; Provisional

  2. XM_032649334.1 → XP_032505225.1  histone H2A type 1-J

    UniProtKB/TrEMBL
    A0A8C9BAM8, A0A8C9BEQ2
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 128
    PTZ00017; histone H2A; Provisional

  3. XM_032649333.1 → XP_032505224.1  histone H2A type 1-J

    UniProtKB/TrEMBL
    A0A8C9BAM8, A0A8C9BEQ2
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 128
    PTZ00017; histone H2A; Provisional

  4. XM_032649331.1 → XP_032505222.1  histone H2A type 1-J

    UniProtKB/TrEMBL
    A0A8C9BAM8, A0A8C9BEQ2
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 128
    PTZ00017; histone H2A; Provisional

RNA

  1. XR_004352250.1 RNA Sequence

  2. XR_004352249.1 RNA Sequence

  3. XR_004352251.1 RNA Sequence

  4. XR_004352248.1 RNA Sequence

Nucleotide Protein
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