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LOC116762406 histone H2A type 1-D [ Phocoena sinus (vaquita) ]

Gene ID: 116762406, updated on 9-Nov-2023

Summary

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Gene symbol
LOC116762406
Gene description
histone H2A type 1-D
See related
Ensembl:ENSPSNG00000004259
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
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Genomic context

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See LOC116762406 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 11 NC_045773.1 (82282298..82282771)

Chromosome 11 - NC_045773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116762381 Neighboring gene histone H2B type 1-L Neighboring gene histone H2B type 1-N Neighboring gene uncharacterized LOC116762442 Neighboring gene histone H2B type 1-L-like Neighboring gene histone H2A type 1-H

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045773.1 Chromosome 11 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H2A type 1-D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045773.1 Reference mPhoSin1.pri

    Range
    82282298..82282771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032649324.1 → XP_032505215.1  histone H2A type 1-D

    UniProtKB/TrEMBL
    A0A8C9BAM8, A0A8C9BE36
    Related
    ENSPSNP00000005732.1, ENSPSNT00000006531.1
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 130
    PTZ00017; histone H2A; Provisional
Nucleotide Protein
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