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LOC116761273 histone H2A.J [ Phocoena sinus (vaquita) ]

Gene ID: 116761273, updated on 18-Mar-2024

Summary

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Gene symbol
LOC116761273
Gene description
histone H2A.J
See related
Ensembl:ENSPSNG00000005325
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See LOC116761273 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 10 NC_045772.1 (91634334..91635009, complement)

Chromosome 10 - NC_045772.1Genomic Context describing neighboring genes Neighboring gene single-pass membrane protein with coiled-coil domains 3 Neighboring gene WW domain binding protein 11 Neighboring gene histone H4 Neighboring gene guanylate cyclase 2C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045772.1 Chromosome 10 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H2A.J

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045772.1 Reference mPhoSin1.pri

    Range
    91634334..91635009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032647044.1 → XP_032502935.1  histone H2A.J

    UniProtKB/TrEMBL
    A0A8C9BAM8, A0A8C9BHJ8
    Related
    ENSPSNP00000007160.1, ENSPSNT00000008134.1
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 129
    PTZ00017; histone H2A; Provisional
Nucleotide Protein
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