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STAT6 signal transducer and activator of transcription 6 [ Phocoena sinus (vaquita) ]

Gene ID: 116760337, updated on 11-Apr-2024

Summary

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Gene symbol
STAT6
Gene description
signal transducer and activator of transcription 6
See related
Ensembl:ENSPSNG00000006492
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See STAT6 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
23
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 10 NC_045772.1 (58712863..58726444)

Chromosome 10 - NC_045772.1Genomic Context describing neighboring genes Neighboring gene neurexophilin 4 Neighboring gene LDL receptor related protein 1 Neighboring gene NGFI-A binding protein 2 Neighboring gene nuclear envelope integral membrane protein 1 Neighboring gene myosin IA Neighboring gene tachykinin precursor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045772.1 Chromosome 10 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in growth hormone receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to peptide hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal transducer and activator of transcription 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045772.1 Reference mPhoSin1.pri

    Range
    58712863..58726444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032645116.1 → XP_032501007.1  signal transducer and activator of transcription 6 isoform X4

    UniProtKB/TrEMBL
    A0A8C9BNC9
    Related
    ENSPSNP00000008782.1, ENSPSNT00000009952.1
    Conserved Domains (5) summary
    cd10377
    Location:517 → 646
    SH2_STAT6; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 6 proteins
    smart00964
    Location:2 → 115
    STAT_int; STAT protein, protein interaction domain
    pfam14596
    Location:655 → 847
    STAT6_C; STAT6 C-terminal
    cd16856
    Location:105 → 276
    STAT6_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 6 (STAT6)
    cd16850
    Location:273 → 432
    STAT6_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 6 (STAT6)

  2. XM_032645113.1 → XP_032501004.1  signal transducer and activator of transcription 6 isoform X1

    Conserved Domains (5) summary
    smart00964
    Location:2 → 115
    STAT_int; STAT protein, protein interaction domain
    pfam14596
    Location:752 → 944
    STAT6_C; STAT6 C-terminal
    cd16856
    Location:105 → 361
    STAT6_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 6 (STAT6)
    cd16850
    Location:358 → 517
    STAT6_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 6 (STAT6)
    cl15255
    Location:602 → 743
    SH2; Src homology 2 (SH2) domain

  3. XM_032645114.1 → XP_032501005.1  signal transducer and activator of transcription 6 isoform X2

    Conserved Domains (5) summary
    cd10377
    Location:602 → 731
    SH2_STAT6; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 6 proteins
    smart00964
    Location:2 → 115
    STAT_int; STAT protein, protein interaction domain
    pfam14596
    Location:740 → 932
    STAT6_C; STAT6 C-terminal
    cd16856
    Location:105 → 361
    STAT6_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 6 (STAT6)
    cd16850
    Location:358 → 517
    STAT6_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 6 (STAT6)

  4. XM_032645115.1 → XP_032501006.1  signal transducer and activator of transcription 6 isoform X3

    Conserved Domains (5) summary
    smart00964
    Location:2 → 115
    STAT_int; STAT protein, protein interaction domain
    pfam14596
    Location:667 → 859
    STAT6_C; STAT6 C-terminal
    cd16856
    Location:105 → 276
    STAT6_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 6 (STAT6)
    cd16850
    Location:273 → 432
    STAT6_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 6 (STAT6)
    cl15255
    Location:517 → 658
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
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