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SMPD1 sphingomyelin phosphodiesterase 1 [ Phocoena sinus (vaquita) ]

Gene ID: 116758540, updated on 18-Mar-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSPSNG00000009506
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 8 NC_045770.1 (61454043..61458666)

Chromosome 8 - NC_045770.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 12-like Neighboring gene caveolae associated protein 3 Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene hemopexin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045770.1 Chromosome 8 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045770.1 Reference mPhoSin1.pri

    Range
    61454043..61458666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032641432.1 → XP_032497323.1  sphingomyelin phosphodiesterase isoform X2

    UniProtKB/TrEMBL
    A0A8C9BVB2, A0A8C9E2H4
    Related
    ENSPSNP00000012889.1, ENSPSNT00000014590.1
    Conserved Domains (2) summary
    smart00741
    Location:83 → 156
    SapB; Saposin (B) Domains
    cd00842
    Location:197 → 492
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_032641430.1 → XP_032497321.1  sphingomyelin phosphodiesterase isoform X1

    Conserved Domains (2) summary
    smart00741
    Location:83 → 156
    SapB; Saposin (B) Domains
    cd00842
    Location:197 → 490
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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