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CASP1 caspase 1 [ Phocoena sinus (vaquita) ]

Gene ID: 116758539, updated on 18-Mar-2024

Summary

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Gene symbol
CASP1
Gene description
caspase 1
See related
Ensembl:ENSPSNG00000010097
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human all
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Genomic context

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Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 8 NC_045770.1 (27852538..27863785)

Chromosome 8 - NC_045770.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor AMPA type subunit 4 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene probable G-protein coupled receptor 45 Neighboring gene caspase-12-like Neighboring gene caspase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045770.1 Chromosome 8 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables caspase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caspase-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045770.1 Reference mPhoSin1.pri

    Range
    27852538..27863785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032641428.1 → XP_032497319.1  caspase-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9C0Q1, A0A8C9C8Z6
    Related
    ENSPSNP00000014350.1, ENSPSNT00000016214.1
    Conserved Domains (2) summary
    smart00115
    Location:153 → 402
    CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues
    cd08325
    Location:5 → 87
    CARD_CASP1-like; Caspase activation and recruitment domain found in Caspase-1 and related proteins

  2. XM_032641429.1 → XP_032497320.1  caspase-1 isoform X2

    Conserved Domains (1) summary
    smart00115
    Location:64 → 313
    CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues
Nucleotide Protein
Heading Accession and Version

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