U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZBTB6 zinc finger and BTB domain containing 6 [ Phocoena sinus (vaquita) ]

Gene ID: 116755157, updated on 18-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ZBTB6
Gene description
zinc finger and BTB domain containing 6
See related
Ensembl:ENSPSNG00000016879
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ZBTB6 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 6 NC_045768.1 (12188335..12205653)

Chromosome 6 - NC_045768.1Genomic Context describing neighboring genes Neighboring gene RAB GTPase activating protein 1 Neighboring gene COP9 signalosome complex subunit 2-like Neighboring gene G protein-coupled receptor 21 Neighboring gene liprin-alpha-1-like Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene small nucleolar RNA SNORD90

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_045768.1 Chromosome 6 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045768.1 Reference mPhoSin1.pri

    Range
    12188335..12205653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032634120.1 → XP_032490011.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A8C9CJ23
    Related
    ENSPSNP00000023039.1, ENSPSNT00000025915.1
    Conserved Domains (5) summary
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:330 → 400
    zf-C2H2_8; C2H2-type zinc ribbon

  2. XM_032634121.1 → XP_032490012.1  zinc finger and BTB domain-containing protein 6

    UniProtKB/TrEMBL
    A0A8C9CJ23
    Conserved Domains (5) summary
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:330 → 400
    zf-C2H2_8; C2H2-type zinc ribbon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.