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TNFSF10 TNF superfamily member 10 [ Phocoena sinus (vaquita) ]

Gene ID: 116753080, updated on 18-Mar-2024

Summary

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Gene symbol
TNFSF10
Gene description
TNF superfamily member 10
See related
Ensembl:ENSPSNG00000004177
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See TNFSF10 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 4 NC_045766.1 (50254965..50273114, complement)

Chromosome 4 - NC_045766.1Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain containing 3B Neighboring gene growth hormone secretagogue receptor Neighboring gene neutral cholesterol ester hydrolase 1 Neighboring gene U4 spliceosomal RNA Neighboring gene epithelial cell transforming 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045766.1 Chromosome 4 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CD40 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045766.1 Reference mPhoSin1.pri

    Range
    50254965..50273114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032630570.1 → XP_032486461.1  tumor necrosis factor ligand superfamily member 10 isoform X1

    UniProtKB/TrEMBL
    A0A8C9BDV0
    Related
    ENSPSNP00000005624.1, ENSPSNT00000006404.1
    Conserved Domains (1) summary
    pfam00229
    Location:152 → 287
    TNF; TNF(tumor Necrosis Factor) family

  2. XM_032630571.1 → XP_032486462.1  tumor necrosis factor ligand superfamily member 10 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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