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SGCD sarcoglycan delta [ Phocoena sinus (vaquita) ]

Gene ID: 116751815, updated on 18-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSPSNG00000011359
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 3 NC_045765.1 (39435109..39853716, complement)

Chromosome 3 - NC_045765.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene U6 spliceosomal RNA Neighboring gene protein lin-28 homolog A-like Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L17-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045765.1 Chromosome 3 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045765.1 Reference mPhoSin1.pri

    Range
    39435109..39853716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032628152.1 → XP_032484043.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C9E3P7
    Related
    ENSPSNP00000015397.1, ENSPSNT00000017382.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

RNA

  1. XR_004349344.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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