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RNF31 ring finger protein 31 [ Phocoena sinus (vaquita) ]

Gene ID: 116748511, updated on 18-Mar-2024

Summary

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Gene symbol
RNF31
Gene description
ring finger protein 31
See related
Ensembl:ENSPSNG00000011549
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See RNF31 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 2 NC_045764.1 (103675685..103692027)

Chromosome 2 - NC_045764.1Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 9 Neighboring gene proteasome activator subunit 2 Neighboring gene interferon regulatory factor 9 Neighboring gene REC8 meiotic recombination protein Neighboring gene importin 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045764.1 Chromosome 2 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K48-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables linear polyubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein linear polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of LUBAC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045764.1 Reference mPhoSin1.pri

    Range
    103675685..103692027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032621644.1 → XP_032477535.1  E3 ubiquitin-protein ligase RNF31

    UniProtKB/TrEMBL
    A0A8C9C291
    Related
    ENSPSNP00000015858.1, ENSPSNT00000017894.1
    Conserved Domains (10) summary
    smart00547
    Location:352 → 376
    ZnF_RBZ; Zinc finger domain
    cd10464
    Location:52 → 153
    PUB_RNF31; PNGase/UBA or UBX (PUB) domain of the RNF31 (or HOIP) protein
    smart00647
    Location:779 → 841
    IBR; In Between Ring fingers
    sd00029
    Location:304 → 323
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cd16631
    Location:698 → 750
    mRING-HC-C4C4_RBR_HOIP; Modified RING finger, HC subclass (C4C4-type), found in HOIL-1-interacting protein (HOIP) and similar proteins
    cd19815
    Location:217 → 258
    Bbox1_HOIP; B-box-type 1 zinc finger found in HOIL-1-interacting protein (HOIP) and similar proteins
    pfam00641
    Location:303 → 327
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam16678
    Location:483 → 627
    HOIP-UBA; HOIP UBA domain pair
    pfam18091
    Location:940 → 1032
    E3_UbLigase_RBR; E3 Ubiquitin Ligase RBR C-terminal domain
    pfam18486
    Location:1 → 65
    PUB_1; PNGase/UBA- or UBX-containing domain
Nucleotide Protein
Heading Accession and Version

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