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LOC116747972 peptidyl-prolyl cis-trans isomerase D-like [ Phocoena sinus (vaquita) ]

Gene ID: 116747972, updated on 9-Nov-2023

Summary

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Gene symbol
LOC116747972
Gene description
peptidyl-prolyl cis-trans isomerase D-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
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Genomic context

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See LOC116747972 in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) X NC_045784.1 (98928068..98929350)

Chromosome X - NC_045784.1Genomic Context describing neighboring genes Neighboring gene ferritin light chain-like Neighboring gene plastin 3 Neighboring gene uncharacterized LOC116747970 Neighboring gene angiotensin II receptor type 2 Neighboring gene solute carrier family 6 member 14 Neighboring gene ADP-ribosylation factor-like protein 5A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045784.1 Chromosome X Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045784.1 Reference mPhoSin1.pri

    Range
    98928068..98929350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032620674.1 → XP_032476565.1  LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D-like

    UniProtKB/TrEMBL
    A0A8C9CAT9
    Conserved Domains (3) summary
    cd01926
    Location:16 → 181
    cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
    TIGR00990
    Location:191 → 361
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:223 → 250
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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