U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GPKOW G-patch domain and KOW motifs [ Phocoena sinus (vaquita) ]

Gene ID: 116747875, updated on 18-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
GPKOW
Gene description
G-patch domain and KOW motifs
See related
Ensembl:ENSPSNG00000022263
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GPKOW in Genome Data Viewer
Location:
chromosome: X
Exon count:
15
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) X NC_045784.1 (43592594..43619967, complement)

Chromosome X - NC_045784.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 45 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene MAGI family member, X-linked Neighboring gene proteolipid protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_045784.1 Chromosome X Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
G-patch domain and KOW motifs-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045784.1 Reference mPhoSin1.pri

    Range
    43592594..43619967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032620495.1 → XP_032476386.1  G-patch domain and KOW motifs-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8C9EEC4
    Related
    ENSPSNP00000030833.1, ENSPSNT00000034593.1
    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:421 → 471
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain

  2. XM_032620491.1 → XP_032476382.1  G-patch domain and KOW motifs-containing protein isoform X1

    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:430 → 480
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain

  3. XM_032620492.1 → XP_032476383.1  G-patch domain and KOW motifs-containing protein isoform X1

    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:430 → 480
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain

  4. XM_032620490.1 → XP_032476381.1  G-patch domain and KOW motifs-containing protein isoform X1

    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:430 → 480
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain

  5. XM_032620493.1 → XP_032476384.1  G-patch domain and KOW motifs-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8C9EEC4
    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:421 → 471
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain

  6. XM_032620488.1 → XP_032476379.1  G-patch domain and KOW motifs-containing protein isoform X1

    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:430 → 480
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain

  7. XM_032620489.1 → XP_032476380.1  G-patch domain and KOW motifs-containing protein isoform X1

    Conserved Domains (3) summary
    cd13152
    Location:238 → 294
    KOW_GPKOW_A; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
    cd13153
    Location:430 → 480
    KOW_GPKOW_B; KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
    pfam12656
    Location:148 → 202
    G-patch_2; G-patch domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.