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ACSL1 acyl-CoA synthetase long chain family member 1 [ Phocoena sinus (vaquita) ]

Gene ID: 116746731, updated on 18-Mar-2024

Summary

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Gene symbol
ACSL1
Gene description
acyl-CoA synthetase long chain family member 1
See related
Ensembl:ENSPSNG00000020474
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See ACSL1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
21
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 21 NC_045783.1 (13301538..13373317, complement)

Chromosome 21 - NC_045783.1Genomic Context describing neighboring genes Neighboring gene caspase 3 Neighboring gene primase and DNA directed polymerase Neighboring gene centromere protein U Neighboring gene voltage-dependent anion-selective channel protein 3-like Neighboring gene helt bHLH transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045783.1 Chromosome 21 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty-acyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045783.1 Reference mPhoSin1.pri

    Range
    13301538..13373317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032618368.1 → XP_032474259.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9CR76, A0A8C9CRD4
    Related
    ENSPSNP00000028267.1, ENSPSNT00000031739.1
    Conserved Domains (1) summary
    cd05927
    Location:66 → 634
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_032618369.1 → XP_032474260.1  long-chain-fatty-acid--CoA ligase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C9CRD4
    Conserved Domains (1) summary
    cd05927
    Location:66 → 600
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_032618366.1 → XP_032474257.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9CRD4, A0A8C9CYB3
    Related
    ENSPSNP00000028292.1, ENSPSNT00000031769.1
    Conserved Domains (1) summary
    cd05927
    Location:116 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Nucleotide Protein
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