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ALOX15 arachidonate 15-lipoxygenase [ Phocoena sinus (vaquita) ]

Gene ID: 116745707, updated on 18-Mar-2024

Summary

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Gene symbol
ALOX15
Gene description
arachidonate 15-lipoxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human all
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Genomic context

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See ALOX15 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
14
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 20 NC_045782.1 (9388348..9395936, complement)

Chromosome 20 - NC_045782.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116745603 Neighboring gene ribonuclease K Neighboring gene arachidonate 12-lipoxygenase, 12S type Neighboring gene uncharacterized LOC116745367 Neighboring gene proline, glutamate and leucine rich protein 1 Neighboring gene arrestin beta 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045782.1 Chromosome 20 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate 12(S)-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arachidonate 15-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: arachidonate 15-lipoxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045782.1 Reference mPhoSin1.pri

    Range
    9388348..9395936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032616699.1 → XP_032472590.1  LOW QUALITY PROTEIN: arachidonate 15-lipoxygenase

    Conserved Domains (2) summary
    cd01753
    Location:2 → 112
    PLAT_LOX; PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and ...
    pfam00305
    Location:217 → 654
    Lipoxygenase
Nucleotide Protein
Heading Accession and Version

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