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SGCA sarcoglycan alpha [ Phocoena sinus (vaquita) ]

Gene ID: 116745193, updated on 18-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
Ensembl:ENSPSNG00000013631
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 20 NC_045782.1 (34488760..34498065, complement)

Chromosome 20 - NC_045782.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 92 Neighboring gene uncharacterized LOC116745195 Neighboring gene collagen type I alpha 1 chain Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene 40S ribosomal protein S17-like Neighboring gene protein phosphatase 1 regulatory subunit 9B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045782.1 Chromosome 20 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045782.1 Reference mPhoSin1.pri

    Range
    34488760..34498065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032615711.1 → XP_032471602.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C9C4W0
    Related
    ENSPSNP00000018895.1, ENSPSNT00000021282.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 348
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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