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VPS4A vacuolar protein sorting 4 homolog A [ Phocoena sinus (vaquita) ]

Gene ID: 116743580, updated on 18-Mar-2024

Summary

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Gene symbol
VPS4A
Gene description
vacuolar protein sorting 4 homolog A
See related
Ensembl:ENSPSNG00000011978
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See VPS4A in Genome Data Viewer
Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 19 NC_045781.1 (41823660..41837210)

Chromosome 19 - NC_045781.1Genomic Context describing neighboring genes Neighboring gene DERPC proline and glycine rich nuclear protein Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene UTP4 small subunit processome component Neighboring gene syntrophin beta 2 Neighboring gene ferritin heavy chain-like Neighboring gene component of oligomeric golgi complex 8 Neighboring gene peptide deformylase, mitochondrial Neighboring gene nucleolar pre-rRNA processing protein NIP7 Neighboring gene transmembrane p24 trafficking protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045781.1 Chromosome 19 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045781.1 Reference mPhoSin1.pri

    Range
    41823660..41837210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032612183.1 → XP_032468074.1  vacuolar protein sorting-associated protein 4A isoform X2

    Conserved Domains (3) summary
    cd02678
    Location:4 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam17862
    Location:315 → 357
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:120 → 290
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

  2. XM_032612182.1 → XP_032468073.1  vacuolar protein sorting-associated protein 4A isoform X1

    Conserved Domains (3) summary
    cd02678
    Location:4 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam17862
    Location:316 → 358
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:121 → 291
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

  3. XM_032612187.1 → XP_032468078.1  vacuolar protein sorting-associated protein 4A isoform X6

    Conserved Domains (3) summary
    cd02678
    Location:4 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam17862
    Location:316 → 358
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:121 → 291
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

  4. XM_032612186.1 → XP_032468077.1  vacuolar protein sorting-associated protein 4A isoform X5

    Conserved Domains (2) summary
    COG0464
    Location:26 → 372
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    cd19521
    Location:121 → 291
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

  5. XM_032612185.1 → XP_032468076.1  vacuolar protein sorting-associated protein 4A isoform X4

    Conserved Domains (4) summary
    cd02678
    Location:4 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:373 → 433
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:315 → 357
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:120 → 290
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

  6. XM_032612184.1 → XP_032468075.1  vacuolar protein sorting-associated protein 4A isoform X3

    UniProtKB/TrEMBL
    A0A8C9BWS4
    Related
    ENSPSNP00000016371.1, ENSPSNT00000018470.1
    Conserved Domains (4) summary
    cd02678
    Location:4 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:374 → 434
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:316 → 358
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:121 → 291
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4
Nucleotide Protein
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