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CHMP1A charged multivesicular body protein 1A [ Phocoena sinus (vaquita) ]

Gene ID: 116743492, updated on 18-Mar-2024

Summary

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Gene symbol
CHMP1A
Gene description
charged multivesicular body protein 1A
See related
Ensembl:ENSPSNG00000008578
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See CHMP1A in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 19 NC_045781.1 (59210534..59216374, complement)

Chromosome 19 - NC_045781.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA MBII-202 Neighboring gene ribosomal protein L13 Neighboring gene dipeptidase 1 Neighboring gene cyclin dependent kinase 10 Neighboring gene spermatogenesis associated 2 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045781.1 Chromosome 19 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
charged multivesicular body protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045781.1 Reference mPhoSin1.pri

    Range
    59210534..59216374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032611955.1 → XP_032467846.1  charged multivesicular body protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A8C9BKU2
    Related
    ENSPSNP00000011616.1, ENSPSNT00000013161.1
    Conserved Domains (1) summary
    cl21588
    Location:12 → 195
    Snf7

  2. XM_032611954.1 → XP_032467845.1  charged multivesicular body protein 1a isoform X1

    Conserved Domains (1) summary
    cl21588
    Location:49 → 196
    Snf7
Nucleotide Protein
Heading Accession and Version

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