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SDC2 syndecan 2 [ Phocoena sinus (vaquita) ]

Gene ID: 116742576, updated on 18-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSPSNG00000014445
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 17 NC_045779.1 (40478309..40608827)

Chromosome 17 - NC_045779.1Genomic Context describing neighboring genes Neighboring gene phosphatidylserine synthase 1 Neighboring gene uncharacterized LOC116742737 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene carboxypeptidase Q Neighboring gene TSPY like 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045779.1 Chromosome 17 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045779.1 Reference mPhoSin1.pri

    Range
    40478309..40608827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032610316.1 → XP_032466207.1  syndecan-2

    UniProtKB/TrEMBL
    A0A8C9CA15
    Related
    ENSPSNP00000019726.1, ENSPSNT00000022213.1
    Conserved Domains (1) summary
    pfam01034
    Location:139 → 200
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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