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GFRA1 GDNF family receptor alpha 1 [ Phocoena sinus (vaquita) ]

Gene ID: 116741682, updated on 18-Mar-2024

Summary

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Gene symbol
GFRA1
Gene description
GDNF family receptor alpha 1
See related
Ensembl:ENSPSNG00000020903
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See GFRA1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 16 NC_045778.1 (70720298..70923838, complement)

Chromosome 16 - NC_045778.1Genomic Context describing neighboring genes Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene attractin like 1 Neighboring gene coiled-coil domain containing 172 Neighboring gene pancreatic lipase related protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045778.1 Chromosome 16 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDNF family receptor alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045778.1 Reference mPhoSin1.pri

    Range
    70720298..70923838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032608605.1 → XP_032464496.1  GDNF family receptor alpha-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9EA48
    Related
    ENSPSNP00000028967.1, ENSPSNT00000032520.1
    Conserved Domains (2) summary
    smart00907
    Location:149 → 228
    GDNF; GDNF/GAS1 domain
    pfam02351
    Location:238 → 332
    GDNF; GDNF/GAS1 domain

  2. XM_032608606.1 → XP_032464497.1  GDNF family receptor alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9EA47
    Related
    ENSPSNP00000028956.1, ENSPSNT00000032508.1
    Conserved Domains (2) summary
    smart00907
    Location:154 → 233
    GDNF; GDNF/GAS1 domain
    pfam02351
    Location:243 → 337
    GDNF; GDNF/GAS1 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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