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SDC4 syndecan 4 [ Phocoena sinus (vaquita) ]

Gene ID: 116740404, updated on 18-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
Ensembl:ENSPSNG00000018486
Gene type
protein coding
RefSeq status
MODEL
Organism
Phocoena sinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
100 current mPhoSin1.pri (GCF_008692025.1) 15 NC_045777.1 (15281076..15301590)

Chromosome 15 - NC_045777.1Genomic Context describing neighboring genes Neighboring gene TP53 target 5 Neighboring gene SYS1 golgi trafficking protein Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4 Neighboring gene antileukoproteinase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045777.1 Chromosome 15 Reference mPhoSin1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mPhoSin1.pri

Genomic

  1. NC_045777.1 Reference mPhoSin1.pri

    Range
    15281076..15301590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032606057.1 → XP_032461948.1  LOW QUALITY PROTEIN: syndecan-4

    UniProtKB/TrEMBL
    A0A8C9CHV3
    Related
    ENSPSNP00000025350.1, ENSPSNT00000028495.1
    Conserved Domains (1) summary
    pfam01034
    Location:142 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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