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b3gat1a beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) a [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116737430, updated on 18-Mar-2024

Summary

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Gene symbol
b3gat1a
Gene description
beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See b3gat1a in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 18 NC_045689.1 (14607959..14712672)

Chromosome 18 - NC_045689.1Genomic Context describing neighboring genes Neighboring gene sialic acid acetylesterase Neighboring gene uncharacterized LOC116737309 Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene uncharacterized LOC116708321

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045689.1 Chromosome 18 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045689.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    14607959..14712672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032590564.1 → XP_032446455.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X4

    Conserved Domains (1) summary
    pfam03360
    Location:129 → 328
    Glyco_transf_43; Glycosyltransferase family 43

  2. XM_032590562.1 → XP_032446453.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X2

    Conserved Domains (1) summary
    pfam03360
    Location:116 → 324
    Glyco_transf_43; Glycosyltransferase family 43

  3. XM_032590561.1 → XP_032446452.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam03360
    Location:129 → 337
    Glyco_transf_43; Glycosyltransferase family 43

  4. XM_032590560.1 → XP_032446451.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam03360
    Location:129 → 337
    Glyco_transf_43; Glycosyltransferase family 43

  5. XM_032590563.1 → XP_032446454.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X3

    Conserved Domains (1) summary
    pfam03360
    Location:105 → 313
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein Strain
Heading Accession and Version

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