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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116737095, updated on 18-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 17 NC_045688.1 (20413566..20516181)

Chromosome 17 - NC_045688.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116736450 Neighboring gene importin 8 Neighboring gene uncharacterized LOC116737101 Neighboring gene uncharacterized LOC116737103 Neighboring gene general transcription factor II-I repeat domain-containing protein 2-like Neighboring gene uncharacterized LOC116737107 Neighboring gene uncharacterized LOC116737109 Neighboring gene uncharacterized LOC116737108 Neighboring gene G-protein coupled receptor 22-like Neighboring gene component of oligomeric golgi complex 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045688.1 Chromosome 17 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045688.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    20413566..20516181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032590085.1 → XP_032445976.1  protein O-mannosyl-transferase TMTC1 isoform X3

    Conserved Domains (3) summary
    TIGR02917
    Location:460 → 807
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_032590084.1 → XP_032445975.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:460 → 816
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_032590083.1 → XP_032445974.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:460 → 864
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_032590087.1 → XP_032445978.1  protein O-mannosyl-transferase TMTC1 isoform X4

    Conserved Domains (3) summary
    TIGR02917
    Location:401 → 805
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:415 → 443
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:224 → 297
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_032590088.1 → XP_032445979.1  protein O-mannosyl-transferase TMTC1 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:308 → 712
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:131 → 204
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

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