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large1 LARGE xylosyl- and glucuronyltransferase 1 [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116736686, updated on 18-Mar-2024

Summary

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Gene symbol
large1
Gene description
LARGE xylosyl- and glucuronyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See large1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 17 NC_045688.1 (20114677..20175334, complement)

Chromosome 17 - NC_045688.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116737133 Neighboring gene zinc finger CCHC domain-containing protein 18-like Neighboring gene B-Raf proto-oncogene, serine/threonine kinase Neighboring gene uncharacterized LOC116736411

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045688.1 Chromosome 17 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LARGE xylosyl- and glucuronyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045688.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    20114677..20175334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032589324.1 → XP_032445215.1  LARGE xylosyl- and glucuronyltransferase 1 isoform X2

    Conserved Domains (2) summary
    cd06431
    Location:137 → 416
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:484 → 599
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. XM_032589323.1 → XP_032445214.1  LARGE xylosyl- and glucuronyltransferase 1 isoform X1

    Conserved Domains (2) summary
    cd06431
    Location:137 → 416
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:472 → 741
    Glyco_transf_49; Glycosyl-transferase for dystroglycan
Nucleotide Protein Strain
Heading Accession and Version

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