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gys1 glycogen synthase 1 (muscle) [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116735648, updated on 18-Sep-2024

Summary

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Gene symbol
gys1
Gene description
glycogen synthase 1 (muscle)
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See gys1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 16 NC_045687.1 (16160116..16170752)

Chromosome 16 - NC_045687.1Genomic Context describing neighboring genes Neighboring gene GTPase KRas Neighboring gene polymerase (DNA directed), delta 1, catalytic subunit Neighboring gene aspartate dehydrogenase domain containing Neighboring gene transmembrane protein 86B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045687.1 Chromosome 16 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen [starch] synthase, muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045687.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    16160116..16170752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032587672.1 → XP_032443563.1  glycogen [starch] synthase, muscle

    Conserved Domains (1) summary
    cd03793
    Location:26 → 615
    GT3_GSY2-like; glycogen synthase GSY2 and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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