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kirrel1a kirre like nephrin family adhesion molecule 1a [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116732719, updated on 18-Mar-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 14 NC_045685.1 (3260575..3313909)

Chromosome 14 - NC_045685.1Genomic Context describing neighboring genes Neighboring gene interleukin 13 receptor, alpha 1 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045685.1 Chromosome 14 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045685.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    3260575..3313909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032583056.1 → XP_032438947.1  kin of IRRE-like protein 1 isoform X1

    Conserved Domains (4) summary
    pfam13927
    Location:307 → 372
    Ig_3; Immunoglobulin domain
    cd00096
    Location:122 → 125
    Ig; Ig strand A [structural motif]
    cd05898
    Location:390 → 493
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:121 → 218
    Ig; Immunoglobulin domain

  2. XM_032583059.1 → XP_032438950.1  kin of IRRE-like protein 1 isoform X4

    Conserved Domains (4) summary
    pfam13927
    Location:307 → 372
    Ig_3; Immunoglobulin domain
    cd00096
    Location:122 → 125
    Ig; Ig strand A [structural motif]
    cd05898
    Location:390 → 493
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:121 → 218
    Ig; Immunoglobulin domain

  3. XM_032583057.1 → XP_032438948.1  kin of IRRE-like protein 1 isoform X2

    Conserved Domains (4) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:121 → 124
    Ig; Ig strand A [structural motif]
    cd05898
    Location:389 → 492
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:120 → 217
    Ig; Immunoglobulin domain

  4. XM_032583058.1 → XP_032438949.1  kin of IRRE-like protein 1 isoform X3

    Conserved Domains (4) summary
    pfam13927
    Location:296 → 361
    Ig_3; Immunoglobulin domain
    cd00096
    Location:111 → 114
    Ig; Ig strand A [structural motif]
    cd05898
    Location:379 → 482
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:110 → 207
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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