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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116730912, updated on 18-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 2 NC_045673.1 (1603630..1700643, complement)

Chromosome 2 - NC_045673.1Genomic Context describing neighboring genes Neighboring gene protein FAM180A-like Neighboring gene uncharacterized LOC116730132 Neighboring gene uncharacterized LOC116730930 Neighboring gene uncharacterized LOC116730920 Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene protein arginine N-methyltransferase 8-B-like Neighboring gene uncharacterized LOC116735513

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045673.1 Chromosome 2 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045673.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    1603630..1700643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032580483.1 → XP_032436374.1  protein O-mannosyl-transferase TMTC2-like

    Conserved Domains (4) summary
    COG0457
    Location:485 → 734
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:647 → 827
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:497 → 525
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:250 → 316
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

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