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LOC116730001 VIP36-like protein [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116730001, updated on 19-Jun-2024

Summary

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Gene symbol
LOC116730001
Gene description
VIP36-like protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC116730001 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 12 NC_045683.1 (28550191..28556854, complement)

Chromosome 12 - NC_045683.1Genomic Context describing neighboring genes Neighboring gene K(lysine) acetyltransferase 6A Neighboring gene uncharacterized LOC116729250 Neighboring gene leukocyte surface antigen CD53-like Neighboring gene T-box transcription factor TBX2-like Neighboring gene TM2 domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045683.1 Chromosome 12 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045683.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    28550191..28556854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032578937.1 → XP_032434828.1  VIP36-like protein

    Conserved Domains (1) summary
    cl14058
    Location:54 → 278
    lectin_L-type; legume lectins
Nucleotide Protein Strain
Heading Accession and Version

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